Sample DataSet :

Gene Regulatory Network: Sample Transcriptional Network Format. The results are based on RegulonDB 5.6 E.coli regulatory network.

Protein Interaction Network: Sample Protein Interaction Network. The results are based on DIP E.coli (Feb 2007) protein interaction dataset.

Gene Ontology: Download from The Gene Ontology website.

Gene Annotation: Download from EBI website.

Software :

Terms of Use for the software

Download the appropriate file below and unzip/untar to a new folder and run run.sh (*NIX) or run.bat (Windows). Make sure you have java binaries (1.4.2+) in your path.

All binaries: binaries.zip

All project source files (Eclipse SDK based): source.zip