Faisal Saied

Publications

Papers in Refereed Journals

  1. A. Klinvex, F. Saied, A. Sameh, "Parallel implementations of the trace minimization scheme TraceMIN for the sparse symmetric eigenvalue problem," Computers \& Mathematics with Applications, vol. 65, 460--468, 2013.

  2. A. Hunter, F. Saied, C. Le and M. Koslowski, "Large Scale 3D Phase Field Dislocation Dynamics Simulations on High Performance Architectures", Intern'l J. of High Performance Computing Applications, vol. 25, 223--235, 2011.

  3. M. Manguoglu, F. Saied, A. Sameh, A. Grama, "Performance Models for the Spike Banded Linear System Solver", Scientific Programming, 19(1), 13--25, 2011.

  4. Murat Manguoglu, Ahmed H. Sameh, Faisal Saied, Tayfun E. Tezduyar and Sunil Sathe, "Preconditioning Techniques for Nonsymmetric Linear Systems in the Computation of Incompressible Flows", J. of Applied Mechanics, vol. 76, No. 2, pp. 021204(1) - 021204(7), 2009.

  5. Mohamed Sayeed, Hansang Bae, Yili Zheng, Brian Armstrong, Rudolf Eigenmann, Faisal Saied, "Measuring High-Performance Computing with Real Applications," Computing in Science and Engineering, vol. 10, no. 4, pp. 60-70, Jul/Aug, 2008.

  6. Gerhard Klimeck, Shaikh Ahmed, Hansang Bae, Neerav Kharche, Steve Clark, Benjamin Haley, Sunhee Lee, Maxim Naumov, Hoon Ryu, Faisal Saied, Marta Prada, Marek Korkusinski, and Timothy B. Boykin, "Atomistic Simulation of Realistically Sized Nanodevices Using NEMO 3-D: Part I - Models and Benchmarks", Invited paper in the Special Issue on Nanoelectronic Device Modeling in IEEE Transactions on Electron Devices, Vol. 54, No. 9, pp.2079--2089, 2007.

  7. Lin Sun, Chinh Le, Faisal Saied, and Jayathi Y. Murthy, "Performance of a Parallel Molecular Dynamics Program for Computation of Thermal Properties", Numerical Heat Transfer, Part B: Fundamentals, Volume 51, Issue 3 & 4, pp. 315--331, April 2007.

  8. James S. Hammonds, Faisal Saied, Mark A. Shannon, "Solving coupled 3-D paraxial wave and thermal diffusion equations with mixed-mode parallel computations". Parallel Computing 33(1), pp. 43-53, 2007.

  9. Dennis C. Smolarski, Ramesh Balakrishnan, Eduardo F. D'Azevedo, John W. Fettig, Bronson Messer, Anthony Mezzacappa, Faisal Saied, Paul E. Saylor, and F. Douglas Swesty, "On the Performance of SPAI and ADI-like Preconditioners for Core Collapse Supernova Simulations in One Spatial Dimension." Computer Physics Communications, 175, pp. 330--338, 2006.

  10. M. Korkusinski, G. Klimeck, H. Xu, S. Lee, S. Goasguen and F. Saied, Atomistic Simulations in Nanostructures Composed of Tens of Millions of Atoms: Importance of long-range Strain Effects in Quantum Dots. Nanotech 2005 Vol. 2,

  11. S. Kilic, F. Saied and A. Sameh, Efficient iterative solvers for structural dynamics problems, Computers and Structures, vol. 82, pp. 2363--2375, 2004.

  12. Mahinthakumar, G., and Saied, F., (2002). A hybrid MPI-OpenMP implementation of an implicit finite-element code on parallel architectures, International Journal of High Performance Computing Applications, Volume 16, Number 4, p. 371-393, Winter 2002.

  13. Y. Liu, B. S. Minsker, and F. Saied, "A one-way spatial multiscale method for optimal bioremediation design." Journal of Water Resources and Planning Management, 127(2), 130-139, 2001.

  14. Saied, F., and G. Mahinthakumar, Efficient Parallel Multigrid Based Solvers for Large Scale Groundwater Flow Simulations, Computers Math. Applic., Vol 35, No. 7, p.45-54, 1998.

  15. M. Holst and F. Saied, Numerical solution of the nonlinear Poisson-Boltzmann equation: Developing more robust and efficient methods. J. Comput. Chem., 16 (1995), pp. 337-364.

  16. M. Holst, R. Kozack, F. Saied, and S. Subramaniam, Protein electrostatics: Rapid multigrid-based Newton algorithm for solution of the full nonlinear Poisson-Boltzmann equation. J. of Biomol. Struct. & Dyn., 11 (1994), pp. 1437-1445.

  17. M. Holst, R. Kozack, F. Saied, and S. Subramaniam, Treatment of electrostatic effects in proteins: Multigrid-based-Newton iterative method for solution of the full nonlinear Poisson-Boltzmann equation. Proteins: Structure, Function, and Genetics, 18 (1994), pp. 231-245. (Formerly Technical Report UIUC-BI-MB-93-01.)

  18. M. Holst, R. Kozack, F. Saied, and S. Subramaniam, Multigrid-based Newton iterative method for solving the full Nonlinear Poisson-Boltzmann equation. Biophysical Journal, 66 (1994), pp. A130-A130.

  19. M. Holst and F. Saied, Multigrid solution of the Poisson-Boltzmann equation. J. Comput. Chem., 14 (1993), pp. 105-113.

  20. T. F. Chan and F. Saied, A comparison of elliptic solvers for general two-dimensional domains. SIAM J. Sci. Stat. Comput.,6:742--760,1985.

Conference Proceedings

  1. M. Manguoglu, E. Cox, F. Saied, and A. Sameh, TRACEMIN-Fiedler: A Parallel Algorithm for Computing the Fiedler Vector, Proceedings of the 2010 VECPAR conference in Lecture Notes in Computer Science (VECPAR10), Springer, Volume 6449, pp.449-455, 2011

  2. M. Manguoglu, F. Saied, A. Sameh, and A. Grama, Performance Models for the Spike Banded Linear System Solver, ISPDC, pp.181-188, 2010 Ninth International Symposium on Parallel and Distributed Computing, 2010.

  3. Lin Sun, Chinh Le, Faisal Saied, and Jayathi Y. Murthy, A Highly Scalable Simulation Model for Atomistic Calculation of Thermal Properties of Silicon, PDPTA'06 / RTCOMP'06: June 26-29, 2006.

  4. Brian Armstrong, Hansang Bae, Rudolf Eigenmann, Faisal Saied, Mohamed Sayeed and Yili Zheng, HPC Benchmarking and Performance Evaluation With Realistic Applications, Proceedings of Benchmarking Workshop 2006, Austin, Texas, January 2006.

  5. Shaikh S. Ahmed, Marek Korkusinski, Faisal Saied, Haiying Xu, Seungwon Lee, Mohamed Sayeed, Sebastien Goasguen and Gerhard Klimeck ,, The 6th LCI International Conference on Linux Clusters: The HPC Revolution 2005, April 26-28, 2005, Chapel Hill, North Carolina, USA.

  6. John Fettig, Wai-Yip Kwok, Faisal Saied, Scaling Behavior of Linear Solvers on Large Linux Clusters. Linux Clusters: The HPC Revolution October 23-25, 2002.

  7. Liu, Y., B. S. Minsker, and F. Saied, Spatial multiscale techniques for groundwater management modeling, Proceedings of the ASCE Water Resources Planning and Management and Water Resources Engineering Joint Conference Session: Long-Term Monitoring: Can the Burden Be Reduced?, Minneapolis, MN, ed. Rollin H. Hotchkiss and Michael Glade, 2000.

  8. Liu, Y., B. S. Minsker, and F. Saied, Multiscale computational techniques for optimal groundwater in-situ bioremediation design, Proceedings of the XIII International Conference on Computational Methods in Water Resources, Calgary, Alberta, Canada, Balkema Publishers, Rotterdam (ISBN 90-5809-123-6), 541-545, 2000.

  9. Mahinthakumar, G., and F. Saied, (1999). Implementation and Performance Analysis of a Parallel Multicomponent Groundwater Transport Code, CD-ROM proceedings of the 1999 SIAM Parallel Processing Meeting, March 22-25, San Antonio, TX.

  10. Mahinthakumar, G., F. Saied, and A. J. Valocchi, Comparison of some parallel Krylov solvers for large scale contaminant transport simulations, High Performance Computing 1997 (Editor: A. M. Tentner), p. 134-139, 1997.

  11. Chia-Ying Huang, Faisal Saied and Edward Seidel, Relativiyt, Proceedings of the 7th Copper Mountain Multigrid Conference, NCSA Technical Report 40, (1997).

  12. J. Bordner and F. Saied, MGLab: An interactive multigrid environment, Seventh Copper Mountain Conference on Multigrid Methods, volume CP 3339, NASA, Hampton, VA, editors N. D. Melson, T. A. Manteuffel, S. F. McCormick and C. C. Douglas, pp. 57--71, 1996.

  13. Mahinthakumar, G. and F. Saied, (1996). Distributed Memory Implementation of Multigrid Methods for Groundwater Flow problems with Rough Coefficients, High Performance Computing 1996 (Editor: A. M. Tentner), p. 51-57, 1996.

  14. D. Resasco, D. Lee, M. H. Schultz and F. Saied, A Parallel 3D Parabolic Wave Equation Solver, Theoretical and Computational Acoustics - Vol.2 ,eds. D.Lee and M.Schultz, 1994.

  15. M. Holst and F. Saied, Multigrid and domain decomposition methods for electrostatics problems. Domain Decomposition Methods in Science and Engineering (Proceedings of the Seventh International Conference on Domain Decomposition Methods, October 27-30, 1993, The Pennsylvania State University) D. E. Keyes and J. Xu, eds., American Mathematical Society, Providence, 1995.

  16. F. Saied, Teaching Linear Algebra at Illinois, Proceedings of the Fifth SIAM Conference on Applied Linear Algebra, Ed. J. G. Lewis, pp. 22--26, SIAM, 1994.

  17. F. Saied and V. Sarin, The spectral Lanczos method applied to the time-independent Schrvdinger Equation, Proceedings of the Fifth SIAM Conference on Applied Linear Algebra, Ed. J. G. Lewis, pp. 331--335, SIAM, 1994.

  18. F. Saied and M. J. Holst, Multigrid Methods for Computational Acoustics on Vector and Parallel Computers. Computational Acoustics -- Volume 1 (Scattering, Supercomputing and Propagation), R. L. Lau, D. Lee, and A. R. Robinson (Editors), North Holland, pp. 71--80, 1993.

  19. D. Lee, M. H. Schultz and F. Saied, Supercomputers in computational ocean acoustics, Proceedings of the 1989 ACM/IEEE conference on Supercomputing, pp.33--140, Reno, Nevada ACM Press, 1989.

  20. F. Saied, C.-T. Ho, S. L. Johnsson, and M. H. Schultz, Solving Schrvdinger's equation on the Intel iPSC by the alternating direction method. In M. T. Heath, editor, Hypercube Multiprocessors 1987, Philadelphia, 1987. SIAM

  21. L. Johnsson, F. Saied, C.T. Ho and M.H. Schultz, The Three-Dimensional Wide Angle Wave Equation, Tridiagonal Systems and the Intel iPSC, Second Conference on Hypercube Multiprocessors, Knoxville, Tennessee, September 29.

Technical Reports

  1. Kumar Mahinthakumar and F. Saied, Multigrid and Krylov Solvers for Large Scale Finite Element Groundwater Flow Simulations on Ditributed Memory Parallel Platforms, Center for Computational Sciences, Oak Ridge National Laboratory, Report ORNL/TM-13441, July 1997.

  2. M. Holst and F. Saied, A short note comparing multigrid and domain decomposition for protein modeling equations. Technical Report CRPC-94-10, Applied Mathematics and CRPC, California Institute of Technology, 1994.

  3. M. Holst and F. Saied, Parallel Performance of some Multigrid Solvers for Three-Dimensional Parabolic Equations. Technical Report UIUCDCS-R-91-1697, Numerical Computing Group, University of Illinois at Urbana-Champaign, 1991.

  4. M. Holst and F. Saied, Vector Multigrid: An Accuracy and Performance Study. Technical Report UIUCDCS-R-90-1636, Numerical Computing Group, University of Illinois at Urbana-Champaign, 1990.

  5. Faisal Saied, Numerical techniques for the solution of the time-dependent Schrvdinger equation and their parallel implementation, Ph.D. Thesis, Department of Computer Science, Yale University, 1990. Available as Research Report YALEU/DCS/RR-811, Department of Computer Science, Yale University.