Metbolomics
Profiling Pipeline (MetPP)
Bionet : An Interactive Visualization and Data Mining Platform
About MetPP & Bionet
- Bionet is subproject of Metabolomics Profiling Pipeline (MetPP). Bionet is an Interactive Visualization and Data Mining (IVDM) platform for molecular expressions. It includes strong visualization features such as different layouts including Lamada-Kuwai, Frutchterman-Reingold, and Spring embedding. It implements essential operations to manipulate the data during visualization such as selecting and hiding nodes, highlighitng neighbors, and selecting sub-networks. It also contains a rich network information panel used to display information including molecule/correlation details, topological information, node-degree distribution, and neighbourhood connectivity. Search could also be performed in order to filter out molecules from selection. Bionet includes the ability to conduct a time course study of different experiments by clustering molecular expression data obtained at different time instants using Self Organizing Maps (SOM).
Source Code and Binaries
- The source code and binaries are managed on our git hub page - Git Hub Home Page
- To check out the source code using SVN :
- svn checkout http://svn.github.com/MetPP/
jsysnet.git jsysnet - To check out (clone) this repository with git using any of those command:
- git clone git://github.com/MetPP/
jsysnet.git jsysnet
- git clone http://github.com/MetPP/
jsysnet.git jsysnet
Publications
- Zhang, M.; Ouyang, Q.; Stephenson, A.; Kane, M.; Salt, D.; Prabhakar, S.; Burgner, J.; Buck, C. & Zhang, X. Interactive analysis of systems biology molecular expression data BMC Systems Biology, 2008